2022年

• Ohshima T.*, Yamamoto H.*, Sakamaki Y., Saito C., Mizushima N. (2022) NCOA4 drives ferritin phase separation to facilitate macroferritinophagy and microferritinophagy
  J. Cell Biol., DOI: 10.1083/jcb.202203102
• Yim W.W., Yamamoto H.*, Mizushima N.* (2022) A HaloTag-based reporter processing assay to monitor autophagic flux
  Autophagy, DOI: 10.1080/15548627.2022.2123638
• Yim W.W., Yamamoto H.*, Mizushima N.* (2022) A pulse-chasable reporter processing assay for mammalian autophagic flux with HaloTag
  eLife, DOI: 10.7554/eLife.78923
• Fu J., Pang Y., Chen H., Yamamoto H., Lin Z., Chen Y., Li Z., Mizushima N., Jia H. (2022) Apicoplast biogenesis mediated by ATG8 requires the ATG12–ATG5-ATG16L and SNAP29 complexes in Toxoplasma gondii
  Autophagy, DOI: 10.1080/15548627.2022.2123639
• Sakamaki J., Ode K.L., Kurikawa Y., Ueda H.R., Yamamoto H., Mizushima N. (2022) Ubiquitination of phosphatidylethanolamine in organellar membranes
  Mol. Cell, DOI: 10.1016/j.molcel.2022.08.008
• Zhang S., Yazaki E., Sakamoto H., Yamamoto H., Mizushima N. (2022) Evolutionary diversification of the autophagy-related ubiquitin-like conjugation systems
  Autophagy, DOI: 10.1080/15548627.2022.2059168
• Yim W.W., Yamamoto H., Mizushima N. (2022) Annexins A1 and A2 are recruited to larger lysosomal injuries independently of ESCRTs to promote repair
  FEBS Lett., DOI: 10.1002/1873-3468.14329

2021年

• Okawa F., Hama Y., Zhang S., Morishita H., Yamamoto H., Levine T.P., Mizushima N. (2021) Evolution and insights into the structure and function of the DedA superfamily containing TMEM41B and VMP1
  J. Cell Sci., DOI: 10.1242/jcs.255877

2020年

• Maeda S., Yamamoto H., Kinch L.N., Garza C.M., Takahashi S., Otomo C., Grishin N.V., Forli S., Mizushima N., Otomo T. (2020) Structure, lipid scrambling activity and role in autophagosome formation of ATG9A
  Nat. Struct. Mol. Biol., DOI: 10.1038/s41594-020-00520-2

2019年

• Pang Y.*, Yamamoto H.*, Sakamoto H., Oku M., Mutungi J.K., Sahani M.H., Kurikawa Y., Kita K., Noda N.N., Sakai Y., Jia H., Mizushima N. (2019) Evolution from covalent conjugation to non-covalent interaction in the ubiquitin-like ATG12 system
  Nat. Struct. Mol. Biol., DOI: 10.1038/s41594-019-0204-3
• Harada K., Kotani T., Kirisako H., Sakoh-Nakatogawa M., Oikawa Y., Kimura Y., Hirano H., Yamamoto H., Ohsumi Y., Nakatogawa H. (2019) Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure
  eLife, DOI: 10.7554/eLife.43088
• Mizushima N., Matsui T., Yamamoto H. (2019) YKT6 as a second SNARE protein of mammalian autophagosomes
  Autophagy, DOI: 10.1080/15548627.2018.1532262

2018年

• Matsui T., Jiang P., Nakano S., Sakamaki Y., Yamamoto H., Mizushima N. (2018) Autophagosomal YKT6 is required for fusion with lysosomes independently of syntaxin 17
  J. Cell Biol., DOI: 10.1083/jcb.201712058

2017年

• Tamura N., Nishimura T., Sakamaki Y., Koyama-Honda I., Yamamoto H., Mizushima N. (2017) Differential requirement for ATG2A domains for localization to autophagic membranes and lipid droplets
  FEBS Lett., DOI: 10.1002/1873-3468.12901
• Uematsu M., Nishimura T., Sakamaki Y., Yamamoto H., Mizushima N. (2017) Accumulation of undegraded autophagosomes by expression of dominant-negative STX17 (syntaxin 17) mutants
  Autophagy, DOI: 10.1080/15548627.2017.1327940
• Nishimura T., Tamura N., Kono N., Shimanaka Y., Arai H., Yamamoto H., Mizushima N. (2017) Autophagosome formation is initiated at phosphatidylinositol synthase-enriched ER subdomains
  EMBO J., DOI: 10.15252/embj.201695189

2016年

• Yamamoto H.*, Fujioka Y.*, Suzuki S.W.*, Noshiro D., Suzuki H., Kondo-Kakuta C., Kimura Y., Hirano H., Ando T., Noda N.N., Ohsumi Y. (2016) The intrinsically disordered protein Atg13 mediates supramolecular assembly of autophagy initiation complexes
  Dev. Cell, DOI: 10.1016/j.devcel.2016.06.015

2015年

• Yamamoto H.*, Shima T., Yamaguchi M., Mochizuki Y., Hoshida H., Kakuta S., Kondo-Kakuta C., Noda N.N., Itoh T., Inagaki F., Akada R., Ohsumi Y.* (2015) The thermotolerant yeast Kluyveromyces marxianus is a useful organism for structural and biochemical studies of autophagy
  J. Biol. Chem., DOI: 10.1074/jbc.M115.684233
• Suzuki S.W., Yamamoto H.*, Oikawa Y., Kondo-Kakuta C., Kimura Y., Hirano H., Ohsumi Y.* (2015) Atg13 HORMA domain recruits Atg9 vesicles during autophagosome formation
  Proc. Natl. Acad. Sci., DOI: 10.1073/pnas.1421092112

2014年

• Fujioka Y.*, Suzuki S.W.*, Yamamoto H.*, Kondo-Kakuta C., Kimura Y., Hirano H., Akada R., Inagaki F., Ohsumi Y., Noda N.N. (2014) Structural basis of starvation-induced assembly of the autophagy initiation complex
  Nat. Struct. Mol. Biol., DOI: 10.1038/nsmb.2822
• Fujimoto T., Yamamoto H., Ohsumi Y. (2014) Different phosphatidylinositol 3-phosphate asymmetries in yeast and mammalian autophagosomes revealed by a new electron microscopic technique
  Autophagy, DOI: 10.4161/auto.28489
• Cheng J., Fujita A., Yamamoto H., Tatematsu T., Kakuta S., Obara K., Ohsumi Y., Fujimoto T. (2014) Yeast and mammalian autophagosomes exhibit distinct phosphatidylinositol 3-phosphate asymmetries
  Nat. Commun., DOI: 10.1038/ncomms4207

2013年

• Suzuki K., Akioka M., Kondo-Kakuta C., Yamamoto H., Ohsumi Y. (2013) Fine mapping of autophagy-related proteins during autophagosome formation in Saccharomyces cerevisiae
  J. Cell Sci., DOI: 10.1242/jcs.122960

2012年

• Kakuta S., Yamamoto H., Negishi L., Kondo-Kakuta C., Hayashi N., Ohsumi Y. (2012) Atg9 vesicles recruit vesicle-tethering proteins Trs85 and Ypt1 to the autophagosome formation site
  J. Biol. Chem., DOI: 10.1074/jbc.M112.411454
• Yamaguchi M., Matoba K., Sawada R., Fujioka Y., Nakatogawa H., Yamamoto H., Kobashigawa Y., Hoshida H., Akada R., Ohsumi Y., Noda N.N., Inagaki F. (2012) Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7
  Nat. Struct. Mol. Biol., DOI: 10.1038/nsmb.2451
• Watanabe Y., Kobayashi T., Yamamoto H., Hoshida H., Akada R., Inagaki F., Ohsumi Y., Noda N.N. (2012) Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18
  J. Biol. Chem., DOI: 10.1074/jbc.M112.397570
• Nakatogawa H., Ohbayashi S., Sakoh-Nakatogawa M., Kakuta S., Suzuki S.W., Kirisako H., Kondo-Kakuta C., Noda N.N., Yamamoto H., Ohsumi Y. (2012) The autophagy-related protein kinase Atg1 interacts with the ubiquitin-like protein Atg8 via the Atg8 family interacting motif to facilitate autophagosome formation
  J. Biol. Chem., DOI: 10.1074/jbc.C112.387514
• Yamaguchi M., Noda N.N., Yamamoto H., Shima T., Kumeta H., Kobashigawa Y., Akada R., Ohsumi Y., Inagaki F. (2012) Structural insights into Atg10-mediated formation of the autophagy-essential Atg12-Atg5 conjugate
  Structure, DOI: 10.1016/j.str.2012.04.018
• Yamamoto H., Kakuta S., Watanabe T.M., Kitamura A., Sekito T., Kondo-Kakuta C., Ichikawa R., Kinjo M., Ohsumi Y. (2012) Atg9 vesicles are an important membrane source during early steps of autophagosome formation
  J. Cell Biol., DOI: 10.1083/jcb.201202061

2011年以前の代表的な論文

• Yamamoto H.*, Itoh N.*, Kawano S., Yatsukawa Y., Momose T., Makio M., Matsunaga M., Yokota M., Esaki M., Shodai T., Kohda D., Hobbs A.E., Jensen R.E., Endo T. (2011) Dual role of the receptor Tom20 in specificity and efficiency of protein import into mitochondria
  Proc. Natl. Acad. Sci., DOI: 10.1073/pnas.1014918108
• Yamamoto H., Fukui K., Takahashi H., Kitamura S., Shiota T., Terao K., Uchida M., Esaki M., Nishikawa S., Yoshihisa T., Yamano K., Endo T. (2009) Roles of Tom70 in import of presequence-containing mitochondrial proteins
  J. Biol. Chem., DOI: 10.1074/jbc.M109.041756
• Yamamoto H., Momose T., Yatsukawa Y., Ohshima C., Ishikawa D., Sato T., Tamura Y., Ohwa Y., Endo T. (2005) Identification of a novel member of yeast mitochondrial Hsp70-associated motor and chaperone proteins that facilitates protein translocation across the inner membrane
  FEBS Lett., DOI: 10.1016/j.febslet.2004.12.018
• Yamamoto H., Esaki M., Kanamori T., Tamura Y., Nishikawa S., Endo T. (2002) Tim50 is a subunit of the TIM23 complex that links protein translocation across the outer and inner mitochondrial membranes
  Cell, DOI: 10.1016/s0092-8674(02)01053-x